I don’t think PVTU output is supported in the official ogs5. you can use
Wenqing’s script
https://github.com/wenqing/post_process_ogs5
On 31.05.17 17:46, Chan-Hee Park wrote:
Thanks, Nori. It works with the new mesh_partition given by WW.
Now, another problem with PVD in the .out file. It doesn’t output
.pvtu files to combine .vtu of each decomposed domain to have a
whole domain. Does this need update Nori?
On Wednesday, May 31, 2017 at 2:54:41 PM UTC+9, Norihiro Watanabe wrote:
Hi,
On 05/31/2017 02:45 PM, Chan-Hee Park wrote:
> Hello Nori,
>
> I have followed your latest patch just merged on CentOS 7. The
> compilation works just fine with the configuration below. However,
when
> I tried it with KueperProblem-PS benchmark, it works great with the
> following.
>
> [nbeyond@cc KueperProblem-PS]$ mpirun -f mfile -np 3 $ogs_petsc
kueper
>
> My question from here is: How can I
> prepare kueper_partitioned_nodes_3.msh,
kueper_partitioned_elems_3.msh,
> and kueper_partitioned_cfg3.msh? I guess those should come from
>
> partmesh --ogs2metis kueper
> mpmetis kueper.mesh
> partmesh --metis2ogs -np 3 -n kueper
>
>
> I do not see how to get the last one (
*kueper_partitioned_cfg3.msh*). I
> appreciate any help on this.
Have you tested with the latest partmesh available from
[https://github.com/ufz/mesh_partition](https://github.com/ufz/mesh_partition)
<[https://github.com/ufz/mesh_partition](https://github.com/ufz/mesh_partition)>? I think Wenqing has made some
changes and it generates _cfg*.
> One more question, please. Would the latest ogs 5 with the patch work
> with HT problems on sequential mode if the configuration files are
> prepared just as I talked? This is extremely important because it
is all
> about scale-up of applications to multi-million nodes. Thanks in
advance.
What do you mean sequential mode? sequential coupling? HT processes
should also work with petsc.
n
>
> Best regards,
>
>
> On Monday, May 29, 2017 at 7:28:03 AM UTC+9, Norihiro Watanabe wrote:
>
> many thanks for reporting the details. The problem should be
fixed in
> #81 ([https://github.com/ufz/ogs5/pull/81](https://github.com/ufz/ogs5/pull/81)
<[https://github.com/ufz/ogs5/pull/81](https://github.com/ufz/ogs5/pull/81)>
> <[https://github.com/ufz/ogs5/pull/81](https://github.com/ufz/ogs5/pull/81)
<[https://github.com/ufz/ogs5/pull/81](https://github.com/ufz/ogs5/pull/81)>>).
>
> best,
> nori
>
> On 05/26/2017 08:39 PM, Luca Urpi wrote:
> > Alright, yes the problem is with reusing the build dir.
> > If cmake is run for the first time, then it sets
OGS_LSOLVER to the
> > corresponding OGS_CONFIG: if no value is given it defaults
to RF.
> Then
> > if the same build folder is used afterwards, with different
> OGS_CONFIG,
> > the OGS_LSOLVER needs to be set manually.
> >
> > With cmake-gui, OGS_LSOLVER must be set manually, since it
is set
> to RF
> > with the first "configure".
> > However, if OGS_LSOLVER is set manually to DEFAULT, then it is
> updated
> > automatically with the right value according to OGS_CONFIG,
running
> > "configure" for the second time.
> > Maybe there is an error and OGS_LSOLVER should be set to
DEFAULT
> by the
> > first "configure"? I am not very practical with cmake
definitions
> and
> > set-up.
> >
> > Thanks for your patience.
> >
> > Luca
> >
> > 2017-05-26 0:11 GMT+02:00 Norihiro Watanabe
> > <[email protected] <javascript:>
> <mailto:[email protected] <javascript:>>>:
> >
> > Hi,
> >
> > sorry there was a typo. it should be -DOGS_CONFIG=PETC. I
> tested on
> > my machine with the following command and it is also
working
> here.
> >
> > cmake ../sources/ -DOGS_CONFIG=PETSC
> > -DPESC_DIR=/opt/petsc/petsc-3.5.4/
-DPETSC_ARCH=gcc-release
> >
> > maybe you need to remove the build dir once and test it
again.
> >
> > n
> >
> >
> > On 05/24/2017 06:41 PM, Luca Urpi wrote:
> >
> > I tried again, at least on the machine I am using
(Fedora
> 25,
> > cmake 3.8.0), it does not set automatically with
cmake or
> with
> > cmake-gui (also, it does not work with MPI).
> >
> >
> > 2017-05-23 23:20 GMT+02:00 Norihiro Watanabe
> > <[email protected] <javascript:>
> > <mailto:[email protected] <javascript:>>
> > <mailto:[email protected] <javascript:>
> > <mailto:[email protected] <javascript:>>>>:
> >
> > Hi Luca,
> >
> > Setting -DOGS_CONFIG=PESC in CMake should be
enough.
> > OGS_LSOLVER is
> > automatically set during cmake.
> >
> > Regarding the PETSc version, I think current OGS5
> supports
> > till 3.5.
> > (Wenqing, please correct me if I'm wrong).
> >
> >
> > Best,
> > Nori
> >
> >
> >
> > On 05/22/2017 11:25 PM, Luca Urpi wrote:
> >
> > Dear OGS developers,
> >
> > although OGS5 is at the end of its
development
> (or am I
> > wrong?)
> > may you update the page
> >
> >
>
[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>>
>
> >
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>>>
>
> >
> >
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>>
>
> >
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>
>
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)
<[https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2](https://docs.opengeosys.org/docs/devguide5/getting-started/build-configuration#panel3-2)>>>>
>
> >
> > adding the information that to compile with
> PETSc not
> > only the
> > OGS_CONFIG must be changed, but also the
> OGS_LSOLVER (see
> > [https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>
> <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>>
> > <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>
> <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>>>
> > <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>
> <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>>
> > <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>
> <[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)
<[https://github.com/ufz/ogs5/pull/18](https://github.com/ufz/ogs5/pull/18)>>>> ) ?
> >
> > It is a trivial problem. But only after you
> solve it.
> >
> > Another question: what is the latest
supported
> version
> > of PETSc
> > by OGS 5.7.1?
> >
> > Thanks.
> >
> > Luca Urpi
> > +41446338372 <tel:%2B41446338372> <tel:%2B41446338372>
> >
> > Swiss Seismological Service
> > ETH Zürich, NO H 62
> > Sonneggstrasse 5
> > 8092 Zürich
> >
> >
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